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  "Title": "Stratigraphic Columns and Order Metrics",
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      "page": "as_stratcol",
      "title": "define stratigraphic column",
      "topics": [
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      ]
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    {
      "page": "bed_thickness",
      "title": "extract bed thicknesses",
      "topics": [
        "bed_thickness"
      ]
    },
    {
      "page": "facies_names",
      "title": "extract facies names from stratigraphic column",
      "topics": [
        "facies_names"
      ]
    },
    {
      "page": "facies_repetitions",
      "title": "have successive beds identical facies?",
      "topics": [
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      ]
    },
    {
      "page": "get_base",
      "title": "find base of stratigraphic column",
      "topics": [
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      ]
    },
    {
      "page": "get_L_unit",
      "title": "extract length unit from stratigraphic columns",
      "topics": [
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    },
    {
      "page": "get_mom",
      "title": "Markov order metric (Burgess 2016)",
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    },
    {
      "page": "get_rom",
      "title": "runs order metric (Burgess 2016)",
      "topics": [
        "get_rom"
      ]
    },
    {
      "page": "is_stratcol",
      "title": "is a valid stratigraphic column?",
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    },
    {
      "page": "merge_beds",
      "title": "merge beds in stratigraphic column",
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    },
    {
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      "topics": [
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    },
    {
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      "title": "order facies names according to appearance",
      "topics": [
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    },
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      "page": "plot.stratcol",
      "title": "basic plotting of stratigraphic columns",
      "topics": [
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      ]
    },
    {
      "page": "print.stratcol",
      "title": "print stratigraphic column to console",
      "topics": [
        "print.stratcol"
      ]
    },
    {
      "page": "rename_facies",
      "title": "rename facies",
      "topics": [
        "rename_facies"
      ]
    },
    {
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      "title": "set length unit of strat column",
      "topics": [
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