{ "_id": "6a17f21cacfb0bcc41da763a", "Package": "admtools", "Title": "Estimate and Manipulate Age-Depth Models", "Version": "0.6.0.9000", "Authors@R": "person(\"Niklas\", \"Hohmann\", , \"N.H.Hohmann@uu.nl\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1559-1838\"))", "Description": "Estimate age-depth models from stratigraphic and\nsedimentological data, and transform data between the time and\nstratigraphic domain.", "URL": "https://github.com/MindTheGap-ERC/admtools,\nhttps://mindthegap-erc.github.io/admtools/", "BugReports": "https://github.com/MindTheGap-ERC/admtools/issues", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "LazyData": "true", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Language": "en-US", "Repository": "https://mindthegap-erc.r-universe.dev", "Date/Publication": "2026-04-28 08:02:57 UTC", "RemoteUrl": "https://github.com/mindthegap-erc/admtools", "RemoteRef": "HEAD", 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"timetree", "class": [ "phylo" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "add_adm_to_multiadm", "title": "add adm object ot multiadm object", "topics": [ "add_adm_to_multiadm" ] }, { "page": "adm_to_ddc", "title": "construct depth-depth curve from age-depth models", "topics": [ "adm_to_ddc" ] }, { "page": "anchor", "title": "anchor age-depth model", "topics": [ "anchor" ] }, { "page": "CarboCATLite_data", "title": "Example data from CarboCATLite", "topics": [ "CarboCATLite_data" ] }, { "page": "condensation", "title": "condensation with height", "topics": [ "condensation" ] }, { "page": "condensation_fun", "title": "condensation function", "topics": [ "condensation_fun" ] }, { "page": "flip_ddc", "title": "reverse direction of depth-depth curve", "topics": [ "flip_ddc" ] }, { "page": "flux_const", "title": "constant deterministic tracer flux", "topics": [ "flux_const" ] }, { "page": "flux_linear", "title": "linear deterministic tracer flux", "topics": [ "flux_linear" ] }, { "page": "flux_quad", "title": "quadratic deterministic tracer flux", "topics": [ "flux_quad" ] }, { "page": "get_completeness", "title": "Determine stratigraphic (in)completeness", "topics": [ "get_completeness", "get_incompleteness" ] }, { "page": "get_data_from_eTimeOpt", "title": "extract data from eTimeOpt results", "topics": [ "get_data_from_eTimeOpt" ] }, { "page": "get_height", "title": "determine stratigraphic height deposited at specific time", "topics": [ "get_height" ] }, { "page": "get_hiat_duration", "title": "extract hiatus duration", "topics": [ "get_hiat_duration" ] }, { "page": "get_hiat_list", "title": "extract hiatus info", "topics": [ "get_hiat_list" ] }, { "page": "get_hiat_no", "title": "get no. of hiatuses", "topics": [ "get_hiat_no" ] }, { "page": "get_hiat_pos", "title": "get hiatus positions", "topics": [ "get_hiat_pos" ] }, { "page": "get_L_tp", "title": "get height/length tie point", "topics": [ "get_L_tp" ] }, { "page": "get_L_unit", 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"page": "is_destructive", "title": "Is deposition destructive?", "topics": [ "is_destructive" ] }, { "page": "is_multiadm", "title": "is valid multiadm object?", "topics": [ "is_multiadm" ] }, { "page": "is_sac", "title": "is valid sac objects", "topics": [ "is_sac" ] }, { "page": "L_axis_lab", "title": "plot height axis label", "topics": [ "L_axis_lab" ] }, { "page": "make_legend", "title": "plot legend", "topics": [ "make_legend" ] }, { "page": "max_height", "title": "get highest stratigraphic tie point", "topics": [ "max_height" ] }, { "page": "max_time", "title": "last time tie point", "topics": [ "max_time" ] }, { "page": "mean_adm", "title": "get mean ADM", "topics": [ "mean_adm" ] }, { "page": "median_adm", "title": "get median ADM", "topics": [ "median_adm" ] }, { "page": "merge_adm_to_multiadm", "title": "combine multiple adm ojects into multiadm object", "topics": [ "merge_adm_to_multiadm" ] }, { "page": "merge_multiadm", "title": "merge multiple multiadm objects", "topics": [ "merge_multiadm" ] }, { "page": "min_height", "title": "get lowest stratigraphic tie point", "topics": [ "min_height" ] }, { "page": "min_time", "title": "first time tie point", "topics": [ "min_time" ] }, { "page": "plot_condensation", "title": "plot condensation in height", "topics": [ "plot_condensation" ] }, { "page": "plot_erosive_intervals", "title": "mark erosive time intervals", "topics": [ "plot_erosive_intervals" ] }, { "page": "plot_sed_rate_l", "title": "plot sed. rate in height", "topics": [ "plot_sed_rate_l" ] }, { "page": "plot_sed_rate_t", "title": "plot sedimentation rate in time", "topics": [ "plot_sed_rate_t" ] }, { "page": "plot.adm", "title": "plotting adm objects", "topics": [ "plot.adm" ] }, { "page": "plot.ddc", "title": "plot depth-depth curve", "topics": [ "plot.ddc" ] }, { "page": "plot.multiadm", "title": "plot multiadm object", "topics": [ "plot.multiadm" ] }, { "page": "plot.sac", "title": "plot sediment accumulation curve", "topics": [ "plot.sac" ] }, { "page": "plot.stratlist", "title": "plot strat list", "topics": [ "plot.stratlist" ] }, { "page": "plot.timelist", "title": "plot time lists", "topics": [ "plot.timelist" ] }, { "page": "quantile_adm", "title": "get quantile ADM", "topics": [ "quantile_adm" ] }, { "page": "rev_dir", "title": "reverse direction of time/depth axis", "topics": [ "rev_dir" ] }, { "page": "sac_to_adm", "title": "turn sed. acc curve into adm", "topics": [ "sac_to_adm" ] }, { "page": "sed_rate_from_matrix", "title": "make sed rate gen from matrix", "topics": [ "sed_rate_from_matrix" ] }, { "page": "sed_rate_gen_from_bounds", "title": "seg rate gen from upper/lower bounds", "topics": [ "sed_rate_gen_from_bounds" ] }, { "page": "sed_rate_gen_gamma", "title": "sed. rate gen based on gamma distribution", "topics": [ "sed_rate_gen_gamma" ] }, { "page": "sed_rate_l", "title": "sedimentation rate in stratigraphic height", "topics": [ "sed_rate_l" ] }, { "page": "sed_rate_l_fun", "title": "sed rate in height function", "topics": [ "sed_rate_l_fun" ] }, { "page": "sed_rate_t", "title": "sedimentation rate in time domain", "topics": [ "sed_rate_t" ] }, { "page": "sed_rate_t_fun", "title": "sedimentation rate function", "topics": [ "sed_rate_t_fun" ] }, { "page": "sedrate_to_multiadm", "title": "Estimate age-depth model from sedimentation rates & tie points", "topics": [ "sedrate_to_multiadm" ] }, { "page": "set_L_unit", "title": "set length units", "topics": [ "set_L_unit" ] }, { "page": "set_L_units", "title": "set length units", "topics": [ "set_L_units" ] }, { "page": "set_section_names", "title": "set section names for depth-depth curves", "topics": [ "set_section_names" ] }, { "page": "set_T_unit", "title": "set time units", "topics": [ "set_T_unit" ] }, { "page": "split_multiadm", "title": "split multiadm objects into adm", "topics": [ "split_multiadm" ] }, { "page": "strat_cont_gen_from_tracer", "title": "proxy values in strat domain", "topics": [ "strat_cont_gen_from_tracer" ] }, { "page": "strat_cont_to_multiadm", "title": "estimate age-depth model from tracer", "topics": [ "strat_cont_to_multiadm" ] }, { "page": "strat_to_time", "title": "transform objects from strat. to time domain", "topics": [ "strat_to_time" ] }, { "page": "strat_to_time.fossils", "title": "transform 'fossils' object from 'FossilSim' between time and strat domain", "topics": [ "strat_to_time.fossils" ] }, { "page": "strat_to_time.list", "title": "transform list from height to time domain", "topics": [ "strat_to_time.list" ] }, { "page": "strat_to_time.numeric", "title": "transform numeric vectors from height to time domain", "topics": [ "strat_to_time.numeric" ] }, { "page": "strat_to_time.phylo", "title": "transform phylo object", "topics": [ "strat_to_time.phylo" ] }, { "page": "strat_to_time.taxonomy", "title": "transform taxonomy object from strat to time domain", "topics": [ "strat_to_time.taxonomy" ] }, { "page": "summary.adm", "title": "summary of age-depth model", "topics": [ 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